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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10524983_10528702_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10524983 - 10528702
Intron Length:
3720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TGGTATCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTTTCCTCCATA
Flanking Amino Acid:
QPTAQTPLVTGLPLHAQSLV
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
77.6
0.62
0.9
73.8
41.4
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
62.9
0.4
2
79.52
37.1

Associated Gene:

Gene:
HDAC4
Ensembl Gene ID:
ENSAPLG00000004358
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037315
10461337 - 10667022
205686
ENSAPLT00000019634
10461337 - 10608961
147625
ENSAPLT00000017922
10461337 - 10639175
177839
ENSAPLT00000040949
10461337 - 10666954
205618