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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10524998_10528702_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10524998 - 10528702
Intron Length:
3705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
ATATTATCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTTTCCTCCATA
Flanking Amino Acid:
QPTAQTPLVTDWYLSGLPLH
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
78.5
0.64
0.9
75.1
39.1
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
62.9
0.4
2
79.52
37.1

Associated Gene:

Gene:
HDAC4
Ensembl Gene ID:
ENSAPLG00000004358
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004612
10461717 - 10667022
205306