Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10548869_10554491_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10548869 - 10554491

Intron Length:

5623

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TCCATCTGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TCTCTTTCCATC

Flanking Amino Acid:

CISSDPRFWYGKTQHSSLDQ

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

76.2

39.9

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

69.6

0.44

0.9

65.1

36.2

Minor 5ss

-1.8

3.3

40.9

45.4

Minor BPS

44.5

-0.4

1.8

54.74

38.3

Associated Gene:

Gene:

HDAC4

Ensembl Gene ID:

ENSAPLG00000004358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017922

10461337 - 10639175

177839

ENSAPLT00000004612

10461717 - 10667022

205306

ENSAPLT00000040949

10461337 - 10666954

205618

ENSAPLT00000037315

10461337 - 10667022

205686

ENSAPLT00000019634

10461337 - 10608961

147625