Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10575095_10608573_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10575095 - 10608573

Intron Length:

33479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAA

U12 Branch Point Sequence:

TAAAAAGTAAAT

Flanking Amino Acid:

PPRVNHMPSSVDVTTALPLQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.5

37.2

Major BPS

56.5

0.16

0.9

63.3

29.1

Major PPT

89.5

0.89

0.6

84.5

23.1

Minor 5ss

-1.9

2.9

37.4

41.9

Minor BPS

40.1

-0.6

2.3

59.08

42.7

Associated Gene:

Gene:

HDAC4

Ensembl Gene ID:

ENSAPLG00000004358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017922

10461337 - 10639175

177839

ENSAPLT00000004612

10461717 - 10667022

205306

ENSAPLT00000037315

10461337 - 10667022

205686

ENSAPLT00000019634

10461337 - 10608961

147625