Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10575095_10666772_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10575095 - 10666772

Intron Length:

91678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAA

U12 Branch Point Sequence:

TAAAAAGTAAAT

Flanking Amino Acid:

LLAMSSQSHPVDVTTALPLQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

81.4

32.1

Major BPS

56.5

0.16

0.9

63.3

29.1

Major PPT

89.5

0.89

0.6

84.5

23.1

Minor 5ss

32.5

-2

3.1

40.7

45.3

Minor BPS

40.1

-0.6

2.3

59.08

42.7

Associated Gene:

Gene:

HDAC4

Ensembl Gene ID:

ENSAPLG00000004358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040949

10461337 - 10666954

205618