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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10608646_10638711_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10608646 - 10638711
Intron Length:
30066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TTGATGTGATAT
Flanking Amino Acid:
SFIFYAEMQKDGLSGRDQPV
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
88.6
0.87
0.7
80.8
31.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
39.2
-0.7
2.2
58.3
44.4

Associated Gene:

Gene:
HDAC4
Ensembl Gene ID:
ENSAPLG00000004358
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017922
10461337 - 10639175
177839