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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10666813_10666927_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10666813 - 10666927
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCCATG
5'SS Class:
major
3'SS Sequence:
CCCTTCTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
CTGTCTCCAATC
Flanking Amino Acid:
MSLCPGFYKDSTLLAMSSQ
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.2
59.7
46.7
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
65.5
0.35
1
66
27.5
Minor 5ss
41.7
-0.9
3.2
56.4
48
Minor BPS
47.8
-0.1
1.9
58.72
41

Associated Gene:

Gene:
HDAC4
Ensembl Gene ID:
ENSAPLG00000004358
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037315
10461337 - 10667022
205686
ENSAPLT00000004612
10461717 - 10667022
205306
ENSAPLT00000040949
10461337 - 10666954
205618