Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10668_11194_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10668 - 11194

Intron Length:

527

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGACT

5'SS Class:

strong_major

3'SS Sequence:

CCTCCTCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAG

U12 Branch Point Sequence:

TTAGGCTTAGTT

Flanking Amino Acid:

LWIISPFMAYGSARHLLKTY

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

77.9

36.3

Major BPS

57.4

0.18

1.7

57.4

49.1

Major PPT

77.1

0.61

0.7

31.5

Minor 5ss

-1.7

3.2

42.5

Minor BPS

49.9

0.07

2.1

72.42

44.9

Associated Gene:

Gene:

STRADB

Ensembl Gene ID:

ENSAPLG00000014653

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048196

7561 - 14454

6894

ENSAPLT00000015296

7561 - 14454

6894