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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1071015_1082495_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1071015 - 1082495
Intron Length:
11481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCG
5'SS Class:
major
3'SS Sequence:
TATTTTCTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
EATDMRENMQMIQESRVLIE
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
59.6
44.8
Major BPS
100
1.24
0.5
100
0
Major PPT
80
0.68
1
76.8
37.1
Minor 5ss
37.2
-1.5
3.2
47.9
47.8
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
PLCL1
Ensembl Gene ID:
ENSAPLG00000006530
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034131
1046535 - 1085165
38631