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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10845145_10854375_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10845145 - 10854375
Intron Length:
9231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTCCTTCTTT
Flanking Amino Acid:
DDVSFHHLRLYVQDKSGVLD
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.3
37.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
87.7
0.85
0.6
85.5
21.9
Minor 5ss
41.2
-1
2.8
53.2
38.8
Minor BPS
48.4
-0
3.6
87.57
38.6

Associated Gene:

Gene:
NDUFA10
Ensembl Gene ID:
ENSAPLG00000004096
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036382
10838774 - 10870544
31771
ENSAPLT00000022073
10832237 - 10870544
38308
ENSAPLT00000004243
10837167 - 10870544
33378