Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1084968_1225451_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1084968 - 1225451

Intron Length:

140484

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGCG

5'SS Class:

strong_major

3'SS Sequence:

AATTATTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTTATTTATTT

Flanking Amino Acid:

AAPRRSSIIKDPSNQKCGRK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

70.5

38.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

77.5

0.62

0.9

70.6

39.9

Minor 5ss

29.5

-2.3

3.4

38.5

46.7

Minor BPS

59.9

0.39

1.7

79.07

37.4

Associated Gene:

Gene:

PLCL1

Ensembl Gene ID:

ENSAPLG00000006530

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006774

1046535 - 1225703

179169