About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10854462_10859844_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10854462 - 10859844
Intron Length:
5383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTCCTCTAATT
Flanking Amino Acid:
TASDAEDVEKVVEDIEYLKF
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.6
0.62
0.9
73.9
34.3
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
61.5
0.44
1.7
79.07
36.9

Associated Gene:

Gene:
NDUFA10
Ensembl Gene ID:
ENSAPLG00000004096
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004243
10837167 - 10870544
33378
ENSAPLT00000036382
10838774 - 10870544
31771
ENSAPLT00000022073
10832237 - 10870544
38308