About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10859900_10863836_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10859900 - 10863836
Intron Length:
3937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
GTGAATTCAATT
Flanking Amino Acid:
AYKKTFLPEISETSEVLQYT
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.3
36.2
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
91.9
0.94
0.6
88.3
21.4
Minor 5ss
35.1
-1.7
2.7
40.3
45.5
Minor BPS
47.5
-0.1
1.7
62.73
41.5

Associated Gene:

Gene:
NDUFA10
Ensembl Gene ID:
ENSAPLG00000004096
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036382
10838774 - 10870544
31771
ENSAPLT00000022073
10832237 - 10870544
38308
ENSAPLT00000004243
10837167 - 10870544
33378