About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10863917_10865756_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10863917 - 10865756
Intron Length:
1840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
AACTTCACAATG
Flanking Amino Acid:
VQKRLQEKGEPYERKVSPQY
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
85.3
0.79
0.7
84.5
30.4
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
45.3
-0.4
1.8
47.79
39.6

Associated Gene:

Gene:
NDUFA10
Ensembl Gene ID:
ENSAPLG00000004096
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036382
10838774 - 10870544
31771
ENSAPLT00000022073
10832237 - 10870544
38308
ENSAPLT00000004243
10837167 - 10870544
33378