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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10869626_10870463_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10869626 - 10870463
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AATCTGTTAATT
Flanking Amino Acid:
GRPRSSVLPAARIHVSPMRN
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
54.4
44.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
30.8
-2.2
3.3
38.2
46.7
Minor BPS
53.9
0.2
2
72.6
38.4

Associated Gene:

Gene:
NDUFA10
Ensembl Gene ID:
ENSAPLG00000004096
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022073
10832237 - 10870544
38308
ENSAPLT00000004243
10837167 - 10870544
33378
ENSAPLT00000036382
10838774 - 10870544
31771