About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10873023_10875491_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10873023 - 10875491
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGACG
5'SS Class:
major
3'SS Sequence:
TTCCCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTTACTTAAACT
Flanking Amino Acid:
GRKRKKPVPKSPKPPPPEGV
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
87.3
0.84
0.7
80
32
Minor 5ss
25.7
-2.8
3.1
30.8
42.9
Minor BPS
70.6
0.73
1.7
88.46
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024819
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039722
10872982 - 10890327
17346