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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10875680_10883958_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10875680 - 10883958
Intron Length:
8279

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTGCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCTGCACTGATT
Flanking Amino Acid:
GYLKVKSYLTAAGTGGGDCM
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.2
19.3
Major BPS
71.2
0.53
1
61
37.5
Major PPT
79.5
0.66
0.9
72.9
37.4
Minor 5ss
24.5
-2.9
3.7
35.8
41.1
Minor BPS
47.1
-0.1
2
68.73
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024819
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039722
10872982 - 10890327
17346