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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10884078_10885299_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10884078 - 10885299
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CCAGGCTCAATT
Flanking Amino Acid:
LFPEGDLLLQALNGFVITVT
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.8
41.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
84.5
0.78
0.8
81.3
36.2
Minor 5ss
51.1
0.04
2.4
67.9
43.4
Minor BPS
44.6
-0.3
2
56.17
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024819
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039722
10872982 - 10890327
17346