Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10886319_10886712_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10886319 - 10886712

Intron Length:

394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATGCCA

5'SS Class:

major

3'SS Sequence:

AATCCCCTGCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TCTTTTCTAATC

Flanking Amino Acid:

CLLDNSSGFLALNFRGRLKL

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

57.8

40.8

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

52.2

0.05

1.1

49.9

38.7

Minor 5ss

31.2

-2.1

3.2

36.9

42.2

Minor BPS

59.8

0.29

1.6

69.85

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039722

10872982 - 10890327

17346