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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10887399_10887712_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10887399 - 10887712
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CTCCACCCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CCTTCCTCCACC
Flanking Amino Acid:
DFIIARQRALSNEEGEEHLR
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.3
70.5
41.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
61.6
0.26
1
60.3
29.5
Minor 5ss
35.4
-1.7
2.8
43
38.4
Minor BPS
54.3
0.12
2
66.23
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024819
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039722
10872982 - 10890327
17346