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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10897289_10897373_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10897289 - 10897373
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTACTAACC
5'SS Class:
weak_major
3'SS Sequence:
TTCTTGCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTGCTTCAAG
Flanking Amino Acid:
GMVEFSSASLVLPVWREGKG
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.9
0.04
1.1
51.2
37.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
73.5
0.53
1.1
71.5
38.6
Minor 5ss
36.3
-1.6
3.2
50.7
39.7
Minor BPS
47.7
-0.3
2.3
60.06
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024822
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022450
10897205 - 10907894
10690