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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10897507_10899280_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10897507 - 10899280
Intron Length:
1774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TGCTTTGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CAGCACTGACCT
Flanking Amino Acid:
LQVQEFTGKPVALKNHGANE
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
78.5
0.64
0.9
72.9
37.4
Minor 5ss
33.2
-1.9
3.5
45.9
44.6
Minor BPS
43.8
-0.3
1.9
56.65
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024822
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022450
10897205 - 10907894
10690