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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10899394_10901882_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10899394 - 10901882
Intron Length:
2489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
TGGCACACACCT
Flanking Amino Acid:
AVPEGELLLQALNGFVLVVT
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
71.7
38.6
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
75.9
0.58
0.7
69
31.5
Minor 5ss
29.4
-2.4
2.9
36
40.7
Minor BPS
39.6
-0.7
2
56.96
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024822
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022450
10897205 - 10907894
10690