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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10903278_10903830_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10903278 - 10903830
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGGCACTGACCT
Flanking Amino Acid:
CLLDNSSGFLALNLQGRLKF
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
80.8
0.69
0.7
73.2
31.7
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
46.4
-0.1
1.9
64.53
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024822
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022450
10897205 - 10907894
10690