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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10904256_10904571_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10904256 - 10904571
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GGCCCCTGTATG
Flanking Amino Acid:
MLYCAENHVRMMRTGESGLT
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
76.1
0.59
0.9
73
31.9
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
44
-0.6
1.8
43.39
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024822
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022450
10897205 - 10907894
10690