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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10921027_10921430_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10921027 - 10921430
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TCACCAAATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCACCAAAT
Flanking Amino Acid:
ELTEVQVLQAGWDQTEQEQQ
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
62.3
0.28
1
52.3
40.7
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
46.6
-0.1
2.2
71.99
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027125
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048503
10920465 - 10927278
6814