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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10921535_10921720_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10921535 - 10921720
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
CCACTCTCAGCC
Flanking Amino Acid:
VLHSVIPPHHAPGILRSIYQ
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
87.4
0.84
0.6
85.2
22.3
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
44.6
-0.4
1.7
48.44
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027125
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048503
10920465 - 10927278
6814