About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10922927_10923015_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
10922927 - 10923015

Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGCTTCGT

5'SS Class:
major

3'SS Sequence:
GCTCTGCCTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTGTGAC

U12 Branch Point Sequence:
CGGGTGTGACCT

Flanking Amino Acid:
QEEGIATSPSRFTVLTLKAL

Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.2
0.48
1.1
61.8
44.3

Major BPS
53.6
0.09
1.4
48.8
46.3

Major PPT
73.1
0.52
0.9
65.6
36.1

Minor 5ss
29.5
-2.3
3.1
42
44.4

Minor BPS
36.9
-0.9
2.2
48.09
45

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10920465 - 10927278
6814