Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10926429_10926556_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10926429 - 10926556

Intron Length:

128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTTGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGCAC

U12 Branch Point Sequence:

TGCACCAGCACC

Flanking Amino Acid:

KQTRRLGKYLLEDNSLDEHL

Intron Amino Acid Position:

663

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

74.1

Major BPS

52.5

0.06

1.4

65.3

41.6

Major PPT

79.9

0.67

0.9

75.8

32.7

Minor 5ss

32.7

-2

3.1

37.9

40.9

Minor BPS

42.6

-0.6

2.1

54.01

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027125

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048503

10920465 - 10927278

6814