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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10926863_10927078_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10926863 - 10927078
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCTCTCTCACA
Flanking Amino Acid:
REEELLIIYEAIQGMMDDVS
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
80.8
0.69
0.7
75.3
26.8
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
48.5
-0.1
2.1
63.12
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027125
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048503
10920465 - 10927278
6814