Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10953865_10953948_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10953865 - 10953948

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

CGGGCAATCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCTGAAT

U12 Branch Point Sequence:

TCAGGCTGAATC

Flanking Amino Acid:

QCEEEEDDAEASGDFGSGAE

Intron Amino Acid Position:

369

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

77.8

38.7

Major BPS

47.7

-0.1

1.6

57.6

45.8

Major PPT

56.2

0.14

47.4

39.3

Minor 5ss

38.4

-1.3

3.3

55.8

48.4

Minor BPS

46.9

-0.2

1.9

55.53

43.2

Associated Gene:

Gene:

COL18A1

Ensembl Gene ID:

ENSAPLG00000019001

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038542

10933902 - 10961530

27629

ENSAPLT00000019431

10946619 - 10961530

14912

ENSAPLT00000038777

10933902 - 10961530

27629