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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10956041_10956211_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10956041 - 10956211
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAAGG
5'SS Class:
major
3'SS Sequence:
TTCCCCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CCACCCACACCC
Flanking Amino Acid:
LGLPGAPGPKGSKGDTGPAG
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
57.5
47.2
Major BPS
50
0
1.2
61.8
35.9
Major PPT
80.9
0.7
0.7
76.1
25.8
Minor 5ss
37.3
-1.4
3.1
49.6
46.3
Minor BPS
40.6
-0.7
1.9
45.88
42.4

Associated Gene:

Gene:
COL18A1
Ensembl Gene ID:
ENSAPLG00000019001
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038542
10933902 - 10961530
27629
ENSAPLT00000019431
10946619 - 10961530
14912
ENSAPLT00000038777
10933902 - 10961530
27629