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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10957320_10957413_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10957320 - 10957413
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CGTCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTGTTCTCACCT
Flanking Amino Acid:
RSLAAVPGPEGRPGHAGFPG
Intron Amino Acid Position:
868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
69.1
0.43
0.8
61.9
28.8
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
52.3
0.15
1.9
71.18
46

Associated Gene:

Gene:
COL18A1
Ensembl Gene ID:
ENSAPLG00000019001
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038777
10933902 - 10961530
27629
ENSAPLT00000038542
10933902 - 10961530
27629
ENSAPLT00000019431
10946619 - 10961530
14912