Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10957965_10958046_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10957965 - 10958046

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGGG

5'SS Class:

major

3'SS Sequence:

CTGCTGTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

GCGGTGCTAATT

Flanking Amino Acid:

IIAANVKGEKGEPGLRGPMG

Intron Amino Acid Position:

923

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

63.1

43.4

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

70.7

0.47

0.9

64.1

36.8

Minor 5ss

25.2

-2.8

3.2

43.1

Minor BPS

-0.6

2.2

51.94

43.5

Associated Gene:

Gene:

COL18A1

Ensembl Gene ID:

ENSAPLG00000019001

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038542

10933902 - 10961530

27629

ENSAPLT00000019431

10946619 - 10961530

14912

ENSAPLT00000038777

10933902 - 10961530

27629