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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10958083_10958179_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10958083 - 10958179
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
CCTCTCGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GCAGCTCTGACC
Flanking Amino Acid:
PGLRGPMGPSGPHGRAGLKG
Intron Amino Acid Position:
935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
62.2
43.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
74.5
0.55
0.9
65
36.3
Minor 5ss
36.5
-1.5
3
51.2
45.1
Minor BPS
46.2
-0.3
1.7
51.5
39.9

Associated Gene:

Gene:
COL18A1
Ensembl Gene ID:
ENSAPLG00000019001
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038542
10933902 - 10961530
27629
ENSAPLT00000019431
10946619 - 10961530
14912
ENSAPLT00000038777
10933902 - 10961530
27629