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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10959074_10959150_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10959074 - 10959150
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTTAC
U12 Branch Point Sequence:
CCCACGTTACCC
Flanking Amino Acid:
KGDVGAPGPPGQFPYDLSHF
Intron Amino Acid Position:
1037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
50.1
0
1.2
43.1
39.2
Major PPT
77.6
0.62
0.8
69.4
36.9
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
43.4
-0.5
2.3
50.09
46.8

Associated Gene:

Gene:
COL18A1
Ensembl Gene ID:
ENSAPLG00000019001
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038777
10933902 - 10961530
27629
ENSAPLT00000038542
10933902 - 10961530
27629
ENSAPLT00000019431
10946619 - 10961530
14912