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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10959195_10959281_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10959195 - 10959281
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
CGCTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAG
U12 Branch Point Sequence:
TCGTCCTAAGGA
Flanking Amino Acid:
DLSHFGASLRGDKGEAGPKG
Intron Amino Acid Position:
1052

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
58
0.2
1.5
65.8
39.5
Major PPT
68.2
0.41
0.9
61.2
35.1
Minor 5ss
33
-1.9
3.3
40.8
45
Minor BPS
46.6
-0.2
2.2
58.48
47.3

Associated Gene:

Gene:
COL18A1
Ensembl Gene ID:
ENSAPLG00000019001
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038542
10933902 - 10961530
27629
ENSAPLT00000019431
10946619 - 10961530
14912
ENSAPLT00000038777
10933902 - 10961530
27629