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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10959396_10959532_F

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10959396 - 10959532
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCACATCACCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCCTCTCTCACA
Flanking Amino Acid:
PGPQGYPGLPGPKGDSIVGP
Intron Amino Acid Position:
1090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.3
34.6
Major BPS
72.7
0.56
1
75
30.1
Major PPT
59.3
0.21
0.9
51.2
37.8
Minor 5ss
32
-2.1
2.6
39.1
38.9
Minor BPS
48.8
-0.1
2.1
63.12
43.7

Associated Gene:

Gene:
COL18A1
Ensembl Gene ID:
ENSAPLG00000019001
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038542
10933902 - 10961530
27629
ENSAPLT00000019431
10946619 - 10961530
14912
ENSAPLT00000038777
10933902 - 10961530
27629