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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10963317_10963406_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10963317 - 10963406
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCGC
5'SS Class:
major
3'SS Sequence:
CGCTCTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
GCTCGCTGCAGG
Flanking Amino Acid:
EGLGPLRASPVLRLLRLLHA
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
60.9
40.7
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
78.8
0.65
0.8
72.4
32.2
Minor 5ss
29.7
-2.3
3.5
41.4
45.3
Minor BPS
35.7
-1.2
2.3
37.98
44.5

Associated Gene:

Gene:
SLC19A1
Ensembl Gene ID:
ENSAPLG00000003535
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003607
10962649 - 10965460
2812