About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10964798_10965235_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10964798 - 10965235
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCGCGCGCCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
CCGCGCTCAGCC
Flanking Amino Acid:
GPDQNFTREEVTNEITPVLS
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
57.5
0.17
0.9
49.3
34.1
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
40.1
-0.7
2
43.56
44.1

Associated Gene:

Gene:
SLC19A1
Ensembl Gene ID:
ENSAPLG00000003535
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003607
10962649 - 10965460
2812