Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10982334_10984713_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10982334 - 10984713

Intron Length:

2380

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTGAG

U12 Branch Point Sequence:

GTGGTGAGAGCT

Flanking Amino Acid:

DGPPGPSGDQGERGPPGPKG

Intron Amino Acid Position:

402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

46.9

-0.1

1.7

42.8

49.4

Major PPT

73.8

0.53

0.9

66.1

40.8

Minor 5ss

35.3

-1.7

3.4

50.1

46.5

Minor BPS

-1.1

2.2

49.86

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001882

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017554

10973567 - 10987443

13877

ENSAPLT00000002359

10973567 - 10988063

14497