Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10986759_10987122_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10986759 - 10987122

Intron Length:

364

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

AATGCTCTAACT

Flanking Amino Acid:

KGHRGPEGLPGPPGPVGPPG

Intron Amino Acid Position:

516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

78.3

37.9

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

78.6

0.64

75.5

38.4

Minor 5ss

35.6

-1.6

2.7

43.3

43.8

Minor BPS

58.9

0.36

1.8

76.29

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001882

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017554

10973567 - 10987443

13877

ENSAPLT00000002359

10973567 - 10988063

14497