About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10992506_11031281_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10992506 - 11031281
Intron Length:
38776

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCGGAGCGC
5'SS Class:
weak_major
3'SS Sequence:
TCTCATTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTCTCTACTT
Flanking Amino Acid:
ETTKSFVKRLPSNVDASLAG
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.4
0.13
1.2
48.5
36.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
69.3
0.44
1
70
34
Minor 5ss
13.4
-4.2
3.7
20
31.9
Minor BPS
53.3
0.18
2
75.83
41.7

Associated Gene:

Gene:
COL6A2
Ensembl Gene ID:
ENSAPLG00000001018
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001007
10988508 - 11041079
52572