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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11031763_11032039_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11031763 - 11032039
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
TTGCACATCATT
Flanking Amino Acid:
IDKMEDMLCPDPQIVCPELP
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
78.8
35.5
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
32.4
-2
2.5
38.4
39.2
Minor BPS
45
-0.3
2.1
67.39
43.3

Associated Gene:

Gene:
COL6A2
Ensembl Gene ID:
ENSAPLG00000001018
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001007
10988508 - 11041079
52572