Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11032079_11040471_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11032079 - 11040471

Intron Length:

8393

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACATT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

ATGCTCCCAACT

Flanking Amino Acid:

IVCPELPCQTELAVAQCTQR

Intron Amino Acid Position:

222

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

84.2

33.9

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

86.5

0.82

0.7

81.2

23.9

Minor 5ss

44.7

-0.6

3.1

45.2

Minor BPS

48.4

-0

1.9

68.87

41.6

Associated Gene:

Gene:

COL6A2

Ensembl Gene ID:

ENSAPLG00000001018

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001007

10988508 - 11041079

52572