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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11060732_11062564_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11060732 - 11062564
Intron Length:
1833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGCTCCTGATCT
Flanking Amino Acid:
QLQQEKMESRRFEEQLQQCL
Intron Amino Acid Position:
2003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
61
0.42
1.8
77.81
44.1

Associated Gene:

Gene:
MCM3AP
Ensembl Gene ID:
ENSAPLG00000015213
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015902
11058961 - 11084463
25503
ENSAPLT00000029100
11058961 - 11084463
25503