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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11068820_11069109_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11068820 - 11069109
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTACCCAAAAAA
Flanking Amino Acid:
NGGKLGISCTRLNWLRNKTV
Intron Amino Acid Position:
1440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
54
0.1
1
59.7
32.6
Major PPT
88.1
0.86
0.8
80.3
37.3
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
47.7
-0.1
2
64.53
40.9

Associated Gene:

Gene:
MCM3AP
Ensembl Gene ID:
ENSAPLG00000015213
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029100
11058961 - 11084463
25503
ENSAPLT00000015902
11058961 - 11084463
25503