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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11069308_11069810_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11069308 - 11069810
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AGTTCATTAATG
Flanking Amino Acid:
ELQCFCKYLQRWRQAVAART
Intron Amino Acid Position:
1374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.2
33
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
79.3
0.66
1
78.5
33.7
Minor 5ss
28
-2.5
3.1
35.2
41.4
Minor BPS
65.4
0.34
1.7
68.15
39.2

Associated Gene:

Gene:
MCM3AP
Ensembl Gene ID:
ENSAPLG00000015213
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015902
11058961 - 11084463
25503
ENSAPLT00000029100
11058961 - 11084463
25503