Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11075364_11075914_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11075364 - 11075914

Intron Length:

551

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TCCACCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

GTTTATGTGACT

Flanking Amino Acid:

ACLLHCYFNQIRKDALKSLN

Intron Amino Acid Position:

1009

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.7

23.7

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

68.6

0.42

0.8

61.6

28.8

Minor 5ss

32.8

-2

2.9

39.7

45.8

Minor BPS

49.9

0.07

2.2

76.66

40.1

Associated Gene:

Gene:

MCM3AP

Ensembl Gene ID:

ENSAPLG00000015213

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029100

11058961 - 11084463

25503

ENSAPLT00000015902

11058961 - 11084463

25503