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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11077383_11077897_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11077383 - 11077897
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTACTTTTCACT
Flanking Amino Acid:
SFELLLGSDKVDHAAAIKEY
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.9
0.65
0.8
72.7
32
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
58.4
0.34
1.7
77.56
39

Associated Gene:

Gene:
MCM3AP
Ensembl Gene ID:
ENSAPLG00000015213
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029100
11058961 - 11084463
25503
ENSAPLT00000015902
11058961 - 11084463
25503